FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
-
Updated
Jun 7, 2024 - Java
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
TrackMate is your buddy for your everyday tracking.
Modular, object-based analysis for ImageJ/Fiji
playing with BigVolumeViewer LUTs/gamma/render
Virtual Orientation Tool FIJI (VOTj) : A Fiji plugin for object centering and alignment
ImageJ convenience layer for N5
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
Plugins for bone image analysis
ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves
making montage or combine tiff images of different sizes
FIJI plugin for the averaging of ND (2/3/4D) images
EV analyzing plugin for Fiji
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
Fiji/ImageJ plugin to annotate a labeled image
Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.
NuclQ - an ImageJ plugin to quantify intensity levels by distance to the nuclear membrane.