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vessel-segmentation

Here are 36 public repositories matching this topic...

open-mmlab / mmsegmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

pytorch transformer image-segmentation semantic-segmentation vessel-segmentation pspnet medical-image-segmentation deeplabv3 retinal-vessel-segmentation realtime-segmentation swin-transformer

Updated Apr 26, 2024
Python

SharifAmit / RVGAN

[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network

tensorflow keras medical-imaging generative-adversarial-network gan generative-adversarial-networks vessel-segmentation miccai medical-image-analysis conditional-gan fundus medical-image-segmentation fundus-image-analysis retinal-vessel-segmentation retinal-diseases

Updated Jun 8, 2022
Python

sraashis / deepdyn

pytorch implementation of paper https://www.frontiersin.org/articles/10.3389/fcomp.2020.00035/full

machine-learning computer-vision graph-algorithms cross-validation pytorch convolutional-neural-networks unet vessel-segmentation image-procesing multiple-gpu u-net pytorch-implementation fundus-image pytorch-vizualization retinal-vessel-segmentation universal-pytorch-framework centralized-image-processing custom-data-loader-pytorch custom-dataloader

Updated Dec 8, 2022
Jupyter Notebook

InsightSoftwareConsortium / ITKTubeTK

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

python jupyter-notebook neuroscience image-registration vessel-segmentation medical-image-processing

Updated Apr 21, 2024
C++

RUB-Bioinf / VesselExpress

🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

docker bioinformatics snakemake high-throughput graph-analysis vessel-segmentation 3d-imaging 3d-skeleton light-sheet-microscopy

Updated Mar 23, 2023
Python

moucheng2017 / EMSSL

[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation

computer-vision semi-supervised-learning expectation-maximization segmentation bayesian medical-image-computing variational-inference computervision vessel-segmentation em-algorithm miccai robustness lung brats adversarial-attacks out-of-distribution miccai2022 miccai-2022

Updated May 12, 2023
Python

DakaiZhou / Vessel-Segmentation-MR-Registration

The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use the segmented carotid to extract Time-Activity-Curve from PET images. It mainly involves 3D image coregistration, vessel segmentation, partial valume correction.

image-processing image-registration vessel-segmentation partial-volume-correction

Updated May 21, 2021
MATLAB

TY-Shi / AFN

Affinity Feature Strengthening for Accurate, Complete and Robust Vessel Segmentation(JBHI)

image-segmentation vessel-segmentation

Updated Jul 17, 2023
Python

sraashis / retinal-fundus-transfer

An example of easytorch implementation on retinal vessel segmentation.

transfer-learning vessel-segmentation u-net biomedical-image-analysis retinal-vessel-segmentation k-fold-cross-validation easy-neural-network-experiments pool-image-datasets u-net-pytorch pytorch-k-fold-cross-validation

Updated Jan 23, 2023
Python

JiajieMo / OctaveUNet

Applying Octave UNet for Retinal Vessel Segmentation.

machine-learning-algorithms vessel-segmentation medical-image-processing octave-convolution octave-unet

Updated Dec 25, 2020
Jupyter Notebook

Binjie-Qin / SVS-net

Sequential vessel segmentation via deep channel attention network

neural-networks vessel-segmentation video-sequences x-ray-angiography

Updated Aug 4, 2023
Python

Sohambasu07 / DR_2021

Diabetic Retinopathy Feature Extraction and Binary Diagnosis

deep-learning cnn medical-imaging segmentation convolutional-neural-networks vgg16 vessel-segmentation diabetic-retinopathy optic-disc exudates-extraction

Updated Nov 27, 2023
Jupyter Notebook

djin31 / VesselExtract

U-net based CNN for segmenting blood vessel and thereafter removal of vessels from fundus image

data-generation vessel-segmentation inpainting unet-pytorch unet-image-segmentation

Updated Jul 13, 2020
Jupyter Notebook

uw-biomedical-ml / oir

OIR Segmentation

machine-learning deep-learning segmentation retina vessel-segmentation retinopathy retina-images

Updated Mar 14, 2018
Lua

jzsherlock4869 / pytorch-unet-for-retina-vessel-segmentation

a simple and easy to follow pytorch implementation of U-net for retina vessel segmentation

deep-learning pytorch segmentation unet vessel-segmentation retinal-vessel-segmentation

Updated Jan 17, 2024
Python

visionlyx / HP-VSP

A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution

deep-learning pytorch vessel-segmentation mpi4py

Updated Feb 11, 2024
Python

Binjie-Qin / RPCA-UNet

Robust PCA Unrolling Network for Super-resolution Vessel Extraction in X-ray Coronary Angiography

deep-neural-networks vessel-segmentation robust-pca weakly-supervised-learning algorithm-unrolling x-ray-angiography vessel-extraction

Updated Jul 4, 2023
Python

psweens / Vascular-TDA

Software to analyse the topology of vascular networks.

tensorflow networkx vessel-segmentation topological-data-analysis blood-vessels skeletonization tda gudhi vessel-center-skeleton vasculature vascular-networks

Updated Apr 26, 2024
Python

mcd8604 / rvsc

classification vessel-segmentation fully-convolutional-networks retinal-images

Updated May 6, 2017
Python

YueCui-Labs / FFCM-MRF

MATLAB GUIs for ToF-MRA data preprocessing, cerebrovascular segmentation and quantification

vessel-segmentation cerebrovascular tof-mra

Updated Apr 14, 2024
MATLAB

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