TreeJ

TreeJ is an ImageJ/Fiji plugin to reconstruct recursively and interactively a cell lineage tree from a static labeled image.

To use it :

        - download the .jar and place it in the Plugin directory of the ImageJ/Fiji directory
        
        - Reload ImageJ/Fiji
        
        - TreeJ is accessible in plugin>TreeJ

or

In Fiji, add the TreeJ site to your list of update sites:

   - Select Help › Update… from the menu to start the updater.

   - Click on Manage update sites.
   
   - Activate the TreeJ update site and close the dialog.
   
   - Click Apply changes and restart ImageJ.

Watch the following tutorial to have a first overview on how to use TreeJ :

To have more information, see :

• imagej.net/plugins/treej for a quick guideline
• the related publication

Reference :

Laruelle, E., Palauqui, JC., Andrey, P. et al. TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images. Plant Methods 19, 128 (2023). https://doi.org/10.1186/s13007-023-01106-x