Watershed for irregular objects
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Updated
Jul 3, 2016 - Java
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Watershed for irregular objects
ImageJ macros and plugins.
An ImageJ/Fiji port of Leif Jonsson's pure Java t-SNE (https://github.com/lejon/T-SNE-Java)
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Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
Analyze_Blebs is a semi-automated ImageJ/FIJI-based plugin for analysis of blebbing cells designed for users at all experience levels and blebs of all types.
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.
ObjCounter ImageJ plugin for object segmentation and counting
Maximum of Laplacian of Gaussian filters (imageJ plugin)
FIJI plugin for the averaging of ND (2/3/4D) images
Virtual Orientation Tool FIJI (VOTj) : A Fiji plugin for object centering and alignment
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Automated tracking and interactive visualization/simulation of select cellular processes
making montage or combine tiff images of different sizes
Java implementation of a proprietary image transfer protocol