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image-stacks

Here are 10 public repositories matching this topic...

BiologyTools / BioImager

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.

plugin imagej scripting microscopy imaging histology microscope micro-manager whole-slide-imaging microscope-stage-controller image-stacks image-acquisition imagej-macro microscope-control

Updated May 8, 2024
C#

BiologyTools / BioGTK

A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

gtk cross-platform imagej geojson biology plugins bio-formats omero roi microscopy openslide image-stacks qupath whole-slide-image imagej-roi imagej-tiff segment-anything segment-anything-model

Updated May 8, 2024
C#

woeishi / VVVV.DX11.Player

VVVV node for high performance playback of image stacks in dx11

directx dx11 vvvv image-stacks

Updated Mar 7, 2019
C#

eadf / libstacker.rs

Image stacker based on OpenCV-rust

rust opencv image-stacks

Updated Oct 24, 2023
Rust

DACUS1995 / image-stacker

opencv ecc orb image-registration image-stacks akaze

Updated Aug 9, 2020
Python

sRassmann / canny3d-thresholder

ImageJ plugin to preform image binarization based on a canny edge detection in 3 dimensions

imagej imagej-plugins canny-edge-detection image-stacks ciliaq-workflow

Updated Mar 16, 2021
Java

Peter-T-Ruehr / stack_cropping

ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.

imagej fiji biology conversion mri tomography material-science histology micro-ct image-stacks image-macro cropping-images

Updated Jul 18, 2023
ImageJ Macro

Peter-T-Ruehr / checkpoint_converter

Converts any image stack to a Stratovan Checkpoint file (*.ckpt) keeping specimen names and voxel sizes.

r imagej biology mri checkpoint tomography botany micro-ct image-stacks zoology imagej-macro geometric-morphometrics

Updated Sep 7, 2021
ImageJ Macro

hansenjn / ExtractSharpestPlane_JNH

ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.

imagej-plugins fiji-plugin z-stack image-stacks microscopy-images zeiss-czi-files imagej-plugin

Updated Nov 4, 2021
Java

mmohn / SER_Reader

ImageJ reader plugin for TIA (Emispec) .ser image files

imagej reader imagej-plugins image-stacks reader-plugin

Updated Nov 14, 2018
Java

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