🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
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Updated
Nov 12, 2020 - Shell
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Scripts to import your FeatureCounts output into DEXSeq
scripts for RNA-Seq analysis
Scripts to index and align Bovine genome with HISAT2
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
A tool for extraction of lexical features from text based on UIMA and MapReduce
Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
This repository contatins a pipeline for RNA-Seq data processing using featurecounts for gene count generation
nextflow ATACseq pipeline for GG02
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