Efficient visualizations for DNA methylation data
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Updated
Nov 16, 2020 - R
Efficient visualizations for DNA methylation data
Github Page for the Baccarelli Lab
Code for "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity"
Predicting Tissue Specific Enhancer Activity from Epigenetic Marks and Sequence
The documented analysis of the results reported in Akol et al., 2023 as R markdowns, Galaxy histories and jupyter logs..
Supplemental codes for the Chapter 14 Chromatin Sequencing and Data Analysis of the NYMU-GRC eBook 基因體技術與資料分析手冊
Ultralight and fast implementation of GoPeaks to call peaks in CUT&Tag/CUT&RUN data
[ACM-BCB 2023 Oral Presentation] Official repository of "Deep learning-based survival prediction using DNA methylation-derived 3D genomic information"
A collection of simple scripts to facilitate the setup of everyday epigenetics experiments and to handle genomic methylation data
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
Snakemake workflow for processing small RNA-seq libaries
CutNtag pipeline for Pasini's lab written in snakemake
Interactive Visualization Browser for Transposable Elements (TEs) community
Tools for epigenetic data analysis
Population analysis of DNA methylation
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Differential DNA methylation landscape analysis for targeted bisulfite-sequencing.
Code for the crb2a multi omics manuscript
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