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8 followers · 16 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Organizations

@maxsonBraunLab
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gartician/README.md

Hi there 👋

Hi, I'm Garth and welcome to this unique corner of the internet! I am a classically trained biochemist who joined the dark side computational side of biology. In my day-to-day position, I help life scientists understand the meaning of their sequencing data, and how that relates to their project's hypotheses. In the Maxson Lab where I currently work, I provide bioinformatic support to all lab members and write pipelines to analyze new sequencing datasets. I am always interested in the latest bioinformatic tools and trends, and I enjoy working with biologists at all levels of the computational spectrum.

When provided the chance, I develop/contribute to open-source bioinformatic software such as GoPeaks, CITEViz, MultiQC, and HINT-ATAC. Get to know me more by visiting my website and my twitter!

Technical Skills

Programming Languages 💻

Python R Shell Script Go

Proficient tools 🛠️

snakemake Anaconda Git snakemake

Bioinformatic Assays 🧬

DNA

CHIP

ATAC

CT

CR

RNA-Seq

scRNA-Seq

CITE-Seq

What I'm doing now

  • 🔭 I’m currently working on: profiling epigenetic changes in acute myeloid leukemia with the Maxson and Braun Labs at the Oregon Health and Science University
  • 🌱 I’m currently learning: Nextflow, docker, and package submission to conda forge
  • 💬 Ask me about: bioinformatics, epigenetic analyses, oncology, informational interviews
  • ⚡ Fun fact: black cats are very photogenic 🐈

My Programming Stats

Top Langs

Pinned

  1. talapas-service-unit-calculator talapas-service-unit-calculator Public

    let UO members calculate the cost of their computational jobs

    Jupyter Notebook

  2. maxsonBraunLab/atac_seq maxsonBraunLab/atac_seq Public

    process and analyze paired-end ATAC-Seq data

    R 3 1

  3. maxsonBraunLab/cutTag-pipeline maxsonBraunLab/cutTag-pipeline Public

    Pipeline for Cut&Tag analysis

    R 16 7

  4. maxsonBraunLab/gopeaks-compare maxsonBraunLab/gopeaks-compare Public

    Compare CUT&TAG peak callers

    R 2 2

  5. maxsonBraunLab/gopeaks maxsonBraunLab/gopeaks Public

    Peak caller for CUT&TAG data

    Go 22 1

  6. maxsonBraunLab/chip_seq maxsonBraunLab/chip_seq Public

    process and analyze paired-end ChIP-Seq data

    Python