CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens. Implemented as R shiny app.
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Updated
Apr 11, 2017 - HTML
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens. Implemented as R shiny app.
CRISPR-Cas9 Excision Therapy Suitability
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
Pre-trained models for the crisprScore package
Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder
Daniel Adediran
Analysis codes for high-throughput short read sequencing data. Especially for RCP-PCR experiments on clonal CRISPR KO samples.
Analysis of CRISPR libraries
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
BWA-based alignment of CRISPR gRNA spacer sequences
BioGRID C-UP (CRISPR Upload) LIMS System
TP final de la materia 7550 - Introduccion a los sistemas inteligentes
Shiny interface for CRISPR gRNAs designed with the crisprVerse
Bowtie-based alignment of CRISPR gRNA spacer sequences
[This is an archived repository, see the current version in Arc Institute GitHub]
Small RNA-Seq analysis for Yan J., Ravisankar P., Zhao A., Li H., Oyler-Castrillo P., Solley S., Chan M., Parsons L., Adamson B. (2023). An endogenous small RNA-binding protein safeguards prime editing. Manuscript submitted for publication.
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
Pre-processing of multiplexed CRISPR / shRNA Screens (deprecated)
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