biomarker-discovery
Here are 41 public repositories matching this topic...
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
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May 5, 2024 - Python
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
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May 13, 2024 - Python
βHΞDI (Biomarker-based Heuristic Engine for Dengue Identification) is a computational tool designed for the identification of Dengue virus serotypes in wastewater next-generation sequencing data.
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Apr 30, 2024 - Go
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
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May 1, 2024 - R
Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
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Apr 9, 2024 - Python
This repository houses all the analysis codes described in the Bayesian nonclinical review paper published in Communications in Statistics – Case Studies and Data Analysis.
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Apr 6, 2024 - HTML
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
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Apr 5, 2024 - R
Multimodal Context-Aware Detection of Glioma Biomarkers using MRI and WSI
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Mar 4, 2024 - Python
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
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Jan 12, 2024 - Python
CimpleG, an R package to find (small) CpG signatures.
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Dec 13, 2023 - R
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Nov 26, 2023 - MATLAB
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
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Nov 6, 2023 - Jupyter Notebook
R package for microbiome biomarker discovery
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Nov 4, 2023 - R
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
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Aug 15, 2023 - Python
This repository contains the data and codes used to produce the results and figures in this publication
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Aug 12, 2023 - TeX
Code implementation of SHRED variants
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Aug 5, 2023 - Python
A package for biomarker selection based on multiset multicover and the cross-entropy-method.
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Jul 18, 2023 - Python
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Apr 2, 2023 - R
Demonstrating machine learning pipeline in biomarker discovery tasks using the PLCO Ovarian Cancer Biomarkers dataset.
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Mar 30, 2023 - Jupyter Notebook
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