The Spatial Profiling Toolbox (SPT) is a lightweight deployment framework for cell analysis computation in the context of histopathology. The pipelines are orchestrated with Nextflow and support Singularity/Docker containerization.
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
nadeemlab/SPT
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Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
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