🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
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Updated
May 14, 2024 - Python
Biological Expression Language is a domain-specific language created by Dexter Pratt at Selventa for encoding qualitative causal, correlative, and associative relations between entities in biological knowledge graphs.
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Curation of Neurodegeneration in Biological Expression Language (CONIB)
A PyBEL extension for analyzing BEL graphs
A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
A Bio2BEL package for DrugBank (https://www.drugbank.ca)
Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)
My personal website, served at https://cthoyt.com
Notebooks demonstrating the usage of PyBEL and PyBEL Tools
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
Guidelines and procedures for curation (manual and semi-automated)
Harmonizing pathway databases using Biological Expression Language (BEL)
Notebooks demonstrating the usage of Bio2BEL packages
A BEL export of Hetionet (https://github.com/hetio/hetionet)
An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
Integration of pathway-related information from WikiPathways in BEL
Integration of pathway-related information from Reactome in BEL
Knowledge curated for NeuroMMSig during the AETIONOMY project
A Bio2BEL package for the Side Effect Resource (SIDER; http://sideeffects.embl.de/)
Created by Dexter Pratt
Released 2012