Docker based on bioconda distribution (v.1.23), with fixed memory issue
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Updated
May 14, 2020 - Dockerfile
Docker based on bioconda distribution (v.1.23), with fixed memory issue
Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]
SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.
Perl scripts for generating quality control stats from BAM files
Udo Stenzel’s jivebunny — a probabilistic demultiplexer for Illumina sequencing data [MIRROR]
COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
Download fastqs or supplementary files from GEO and upload to hca-util bucket
Next-gen Sequencing analysis tools
htslib for the zig build system
Filter alignments on sequence length and/or identity of first nucleotide.
A comprehensive quality check tool for BAM file produced in NGS workflow.
FLiCK - Format LeveragIng Compression frameworK
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