ATAC-Seq analysis. (Ali T. Abdallah)
-
Updated
Apr 28, 2023 - R
ATAC-Seq analysis. (Ali T. Abdallah)
Workflow Template
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
A comprehensive source for Stathopoulos lab code generated and used in data analysis.
Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
Pipeline for processing epigenomic NGS data.
Pipeline codes for analyzing various genomics datasets based on MACS3
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
All-in-one analysis pipeline
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Add a description, image, and links to the atac-seq-pipeline topic page so that developers can more easily learn about it.
To associate your repository with the atac-seq-pipeline topic, visit your repo's landing page and select "manage topics."