Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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Updated
May 25, 2024 - R
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
A state-of-the-art snakemake workflow for amplicon sequencing
Microbial Community Analysis with Chipster
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
𝐛𝐚𝐫𝐛𝐚𝐜 is an R package designed for the 𝘦𝘹𝘵𝘳𝘢𝘤𝘵𝘪𝘰𝘯 of barcode sequences. It efficiently 𝘤𝘭𝘶𝘴𝘵𝘦𝘳𝘴 these sequences and provides functionality for the calculation and visualization of 𝘵𝘪𝘮𝘦 𝘴𝘦𝘳𝘪𝘦𝘴 trajectories of the barcoded data.
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Workflow and R scripts for Giongo et al. (2024)
Tools for visualising microbial community amplicon data
Tesis licenciatura "Metataxonómica de bacterias comoindicador de la descarga de xenobióticos por el Anillo de Cenotes en el sedimento de manglar rojo"
Docs for AmpliPiper, developed by @nhmvienna
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
gNOMO2 allows integrated multi-omics analyses of microbiomes
metagenome simulation for targeted and reduced-representation sequencing
Amplicon sequencing analysis workflow using DADA2 and QIIME2
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
The impact of transitive annotation on the training of taxonomic classifiers
This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.
Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
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