Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Updated
May 9, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Tools for visualising microbial community amplicon data
Various functions for analysis of microbial community data
A web app for environmental DNA metabarcoding analysis
Interactive application to explore various ecological diversity metrics
microhaplotype visualizer and analyzer
Metagenomics calibration R package
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing
Analysis for McLaren, Willis, and Callahan (2019)
In-silico PCR, primer design and padlock design for in-situ sequencing
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
A state-of-the-art snakemake workflow for amplicon sequencing
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
a set of tools for viral amplicon schemes
🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
Statistical and Computational methods for Microbiome Studies.
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