Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
-
Updated
May 16, 2024 - C++
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
Long read structural variants in rare disease cohort
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Calculate allele frequencies from a sequence multialignment.
Identification of cancer-causing variants
Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
A python library to develop genomic data simulators
A tool for downloading HLA alleles, epitopes and frequencies
A command-line parser for VCF files designed for population genetics analyses.
Complexity of Infection Estimation with Allele Frequencies
ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.
(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
Code for NCD1 and NCD2 statistics to detect long-term balancing selection
A Python script that generate population genotype frequency file from 1000G data
An R script for generating allele frequencies from DNA/amino acid sequence alignments.
A tool to find reads supporting/opposing structural variant breakpoints
Tutorial for performing redundancy analysis
Scripts and data processing notes for Russian exome sequencing AF paper
Add a description, image, and links to the allele-frequencies topic page so that developers can more easily learn about it.
To associate your repository with the allele-frequencies topic, visit your repo's landing page and select "manage topics."