Tutorial for performing redundancy analysis
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Updated
Oct 21, 2020 - R
Tutorial for performing redundancy analysis
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Complexity of Infection Estimation with Allele Frequencies
A tool to find reads supporting/opposing structural variant breakpoints
A tool for downloading HLA alleles, epitopes and frequencies
Code for NCD1 and NCD2 statistics to detect long-term balancing selection
(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.
Scripts and data processing notes for Russian exome sequencing AF paper
A command-line parser for VCF files designed for population genetics analyses.
ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.
Calculate allele frequencies from a sequence multialignment.
A python library to develop genomic data simulators
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
An R script for generating allele frequencies from DNA/amino acid sequence alignments.
Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'
Long read structural variants in rare disease cohort
Identification of cancer-causing variants
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
A compilation of widely available forensic allele frequencies as an R package
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