WIP: Add scripts/pairwise_to_matrix/ helper script
#198
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thanks!! The downside to this approach is that |
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and, as noted in the docs, lots of tricky dependencies - esp h5py. I suspect this will work well as a separate plugin! |
ctb
changed the title
scripts/pairwise_to_matrix/ helper script
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a dumb, and presumably much less efficient, version of this functionality is available in https://github.com/sourmash-bio/sourmash_plugin_betterplot/ as |
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Description
This pull request adds a new 'scripts/' directory to the Branchwater project. The directory is dedicated to stand-alone scripts designed to post-process the output generated by various Branchwater commands.
Adding
scripts/pairwise_to_matrixThis script efficiently converts pairwise command outputs into sparse matrices and enables their export to TSV format. The script uses
Dask, so it's engineered for large-scale data processing.