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66 Open 76 Closed
66 Open 76 Closed
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Issues list

differences between this plugin's gather and sourmash gather
#331 opened May 12, 2024 by ctb
1
full gather results from plugin are not compatible with sourmash tax
#330 opened May 12, 2024 by ctb
2
update docs before next release
#329 opened May 10, 2024 by ctb
1
RocksDB-based fastmultigather is broken.
#322 opened May 4, 2024 by ctb
2
fastmultigather returns different results from sourmash gather in Python, in PR #298
#318 opened May 4, 2024 by ctb
1
2
fastgather slower than sourmash gather for more complex samples?
#312 opened Apr 27, 2024 by zxl124
6
examine pyo3 updates to see if we should adjust how we use pyo3
#311 opened Apr 24, 2024 by ctb
1
missing generics for new version of zip module
#309 opened Apr 22, 2024 by ctb
use Record.filename to get match filename for full gather outputs
#303 opened Apr 20, 2024 by bluegenes
1
2
manysketch: add --already-done input
#301 opened Apr 15, 2024 by bluegenes
Can't get fastmultigather to write to a specific output file
#299 opened Apr 12, 2024 by AnneliektH
6
manysketch: check ambiguous nucleotide handling
#297 opened Apr 2, 2024 by bluegenes
rocksdb fastmultigather query result sums to > 1
#291 opened Mar 25, 2024 by bluegenes
2
multisearch continues past "no query signatures loaded, exiting" message
#280 opened Mar 19, 2024 by ctb
4
fix -h messages
#279 opened Mar 19, 2024 by ctb
fastmultigather gets killed because of memory usage
#273 opened Mar 12, 2024 by AnneliektH
1
fastmultigather against rocksdb gives "No such file or directory (os error 2)"
#272 opened Mar 12, 2024 by AnneliektH
3
fastgather is faster than fastmultigather in loading the database
#268 opened Mar 8, 2024 by mr-eyes
5
support standalone manifests containing zip files
#266 opened Mar 5, 2024 by ctb
provide a better error when trying to read a zip file without a manifest
#264 opened Mar 5, 2024 by ctb
1
4
allow search against multiple databases?
#263 opened Mar 5, 2024 by bluegenes
1
allow translation via manysketch?
#262 opened Mar 5, 2024 by bluegenes
optionally output matches and unassigned from fastmultigather
#258 opened Feb 29, 2024 by bluegenes
how are manysearch results ordered, and can we threshold num results returned? fyi
#257 opened Feb 28, 2024 by bluegenes
1
pairwise/clustering downstream-analysis research-driven thoughts
#252 opened Feb 27, 2024 by mr-eyes
1
ProTip! no:milestone will show everything without a milestone.