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Snakemake 8.9.0 on a singularity slurm cluster combination error #2808
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The apptainer parameters had to be written in a YAML file and given as argument to the
cat ./profile/apptainer/config.v8+.yaml
This worked for me |
I am also running into this error while trying to use
The above solution did not work and I've also tried passing it through the command line: I'm not sure if this is an issue with the Additional details:Config
Minimal snakefile
Command
My current versions:
Any help is appreciated 🙏 |
Same issue using that command on snakemake 8.10.7:
|
Same issue to me using |
Same issue with |
I am trying to run snakemake 8.9.0 using singularity on a slurm cluster,
Constantly getting this error, not sure what is wrong with the syntax
Command:
Error:
__main__.py: error: argument --apptainer-args/--singularity-args: expected one argument
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