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software deployment conda confusion #2807

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pdimens opened this issue Apr 12, 2024 · 0 comments
Open

software deployment conda confusion #2807

pdimens opened this issue Apr 12, 2024 · 0 comments
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@pdimens
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pdimens commented Apr 12, 2024

Snakemake version
8.10.7 (snakemake-minimal)

Describe the bug

The --help string for snakemake lists the new --software-deployment-method option, however in the section immediately following it, --use-conda is listed and says the default is false. These options are confusing-- does one need to use both
--software-deployement-method conda and --use-conda, or would it be enough to just use the --sdm?

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@pdimens pdimens added the bug Something isn't working label Apr 12, 2024
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