/
test-environment.yml
70 lines (70 loc) · 1.09 KB
/
test-environment.yml
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channels:
- conda-forge
- bioconda
- nodefaults
dependencies:
- python >=3.11
- mamba
- yte
- packaging
- stopit
- datrie
- boto3
- httpretty
- wrapt
- pyyaml
- pytest
- pytest-mock
- pytest-cov
- pytest-split
- ftputil
- pysftp
- requests
- responses
- numpy
- appdirs
- pytools
- docutils
- pygments
- pandoc
- xorg-libxrender
- xorg-libxext
- xorg-libxau
- xorg-libxdmcp
- xorg-libsm
- psutil
- oauth2client
- configargparse
- appdirs
- jsonschema
- pandas
- gitpython
- pulp >=2.3.1
- environment-modules
- nbformat
- toposort >=1.10
- crc32c
- requests-mock
- peppy
- eido
- glpk
- smart_open
- filelock
- tabulate
- reretry
- graphviz
- humanfriendly
- throttler
- dpath
- nodejs # for cwltool
- immutables
- conda
- pip
- pip:
- cwltool
- cwl-utils
- snakemake-interface-executor-plugins >=9.1.0
- snakemake-executor-plugin-cluster-generic >=1.0.9
- snakemake-storage-plugin-http
- snakemake-storage-plugin-s3
- snakemake-storage-plugin-fs >=1.0.3