Merge pull request #8550 from satijalab/develop

Seurat v5.0.2

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: Seurat
-Version: 5.0.1
-Date: 2023-11-16
+Version: 5.0.2
+Date: 2024-02-28
 Title: Tools for Single Cell Genomics
 Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
 Authors@R: c(
@@ -113,7 +113,7 @@ Collate:
     'sketching.R'
     'tree.R'
     'utilities.R'
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 Encoding: UTF-8
 Suggests:
     ape,

NEWS.md

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+# Seurat 5.0.2 (2024-02-28) 
+
+## Changes
+
+- Fixed `AverageExpression` to handle `features` vector when `layer="scale.data"` and `return.seurat=TRUE`
+- Added `fc.slot` parameter to `FindMarkers`
+- Fixed `SCTransform` to handle `vars.to.regress` ([#8148](https://github.com/satijalab/seurat/issues/8148)) and ([#8349](https://github.com/satijalab/seurat/issues/8349))
+- Fixed `SCTransform` to handle fetching residuals ([#8185](https://github.com/satijalab/seurat/issues/8185))
+
 # Seurat 5.0.1 (2023-11-16)
 
 ## Changes