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@parklab

Park Lab at Harvard Medical School

Pinned

  1. nozzle nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 67 22

  2. NGSCheckMate NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 119 46

  3. emsar emsar Public

    EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)

    C 8 1

Repositories

Showing 10 of 36 repositories
  • r-scan2 Public

    R package supporting the SCAN2 pipeline

    R 0 3 0 0 Updated Apr 27, 2024
  • Salamander Public

    Salamander is a non-negative matrix factorization framework for signature analysis

    Python 8 MIT 0 0 0 Updated Apr 25, 2024
  • MuSiCal Public

    A comprehensive toolkit for mutational signature analysis

    Python 26 4 1 0 Updated Apr 23, 2024
  • MSIprofiler Public

    Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data

    Python 20 4 0 3 Updated Apr 22, 2024
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    Python 10 4 11 0 Updated Apr 18, 2024
  • HiScanner Public
    C 0 MIT 0 0 0 Updated Apr 11, 2024
  • code-share Public

    Repository to host shared code for the lab

    Shell 0 0 0 0 Updated Mar 12, 2024
  • luquette-glia-analysis Public

    Scripts for the glia project

    R 0 0 0 0 Updated Mar 6, 2024
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    Python 86 19 9 2 Updated Mar 2, 2024
  • ViScanner Public

    Scanner output visualization tool

    JavaScript 0 0 0 0 Updated Feb 16, 2024
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