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34 followers · 4 following
  • Exact Sciences

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Achievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Sharkx3
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Achievements

Achievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Sharkx3
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Organizations

@parklab @hms-dbmi @4dn-dcic
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Pinned

  1. parklab/emsar parklab/emsar Public

    EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)

    C 8 1

  2. 4dn-dcic/tibanna 4dn-dcic/tibanna Public

    Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ …

    Python 67 26

  3. 4dn-dcic/pairix 4dn-dcic/pairix Public

    1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

    C 83 13

  4. 4dn-dcic/Rpairix 4dn-dcic/Rpairix Public

    R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text file

    C 8 4

  5. 4dn-dcic/docker-4dn-hic 4dn-dcic/docker-4dn-hic Public

    Docker for 4DN Hi-C processing pipeline

    Common Workflow Language 55 17

  6. parklab/NGSCheckMate parklab/NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 119 46