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v0.8.4
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@nvictus nvictus released this 04 Apr 23:53
· 337 commits to master since this release
v0.8.4
0d7fa9b

Enhancements

  • When creating coolers from unordered input, change the default temporary dir to be the same as the output file instead of the system tmp (pass '-' to use the system one). #150
  • cooler ls and list_coolers() now output paths in natural order. #153
  • New option in cooler.matrix() to handle divisive balancing weight vectors.

Bug fixes

  • Restore function of --count-as-float option to cooler load
  • Fixed partitioning issue sometimes causing some bins to get split during coarsen
  • rename_chroms() will refresh cached chromosome names #147
  • Cooler.bins() selector will always properly convert bins/chrom integer IDs to categorical chromosome names when the number of contigs is very large and therefore the HDF5 ENUM header is missing. Before this would only happen when explicitly requesting convert_enum=True.
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