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Balancing enhancements #210

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nvictus opened this issue Jun 30, 2020 · 0 comments

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enhancement help wanted

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nvictus commented Jun 30, 2020

Consolidating multiple issues:

store median and MAD coverage in weight attrs store median coverage and coverage MAD in balance attrs #164
add relative tolerance switch from absolute tolerance to relative? #131
add safety margin Add "safety margin" argument for ICE #83
alternative rescaling of cis-only weights in cis-only IC, rescale post-IC cis-only marginals to chromosome-wide cis/total ratios calculated from raw data #126
add cis/total-based filtering calculate cis/total during balancing and use it to filter rows #134

nvictus added the enhancement label

This was referenced Jun 30, 2020

store median coverage and coverage MAD in balance attrs #164

Closed

switch from absolute tolerance to relative? #131

Closed

Add "safety margin" argument for ICE #83

Closed

in cis-only IC, rescale post-IC cis-only marginals to chromosome-wide cis/total ratios calculated from raw data #126

Closed

calculate cis/total during balancing and use it to filter rows #134

Closed

nvictus added the help wanted label

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