Merge pull request #1231 from apmody/new_terms_2778_to_2785

New terms, issue #1176
obi-ontology · Sep 28, 2020 · ba19aa9 · ba19aa9
2 parents 4b45030 + 948a6e6
commit ba19aa9
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diff --git a/src/ontology/OntoFox_inputs/Uberon_input.txt b/src/ontology/OntoFox_inputs/Uberon_input.txt
@@ -107,7 +107,11 @@ http://purl.obolibrary.org/obo/UBERON_0012168 # umbilical cord blood
 http://purl.obolibrary.org/obo/UBERON_0013755 # arterial blood 
 http://purl.obolibrary.org/obo/UBERON_0013756 # venous blood 
 http://purl.obolibrary.org/obo/UBERON_0013757 # capillary blood 
-
+http://purl.obolibrary.org/obo/UBERON_0003126 # trachea
+http://purl.obolibrary.org/obo/UBERON_0001707 # nasal cavity
+http://purl.obolibrary.org/obo/UBERON_0005921 # middle nasal concha
+http://purl.obolibrary.org/obo/UBERON_0001558 # lower respiratory tract
+http://purl.obolibrary.org/obo/UBERON_3000016 # anterior nasal wall
 
 
 [Top level source term URIs and target direct superclass URIs]

diff --git a/src/ontology/OntoFox_outputs/Uberon_imports.owl b/src/ontology/OntoFox_outputs/Uberon_imports.owl
@@ -631,6 +631,18 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0001558 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001558">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
+        <obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower respiratory tract</obo:IAO_0000111>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified]</obo:IAO_0000115>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower respiratory tract</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_0001567 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001567">
@@ -667,6 +679,17 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0001707 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001707">
+        <obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nasal cavity</obo:IAO_0000111>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present.</obo:IAO_0000115>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nasal cavity</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_0001723 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001723">
@@ -1069,6 +1092,18 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0003126 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0003126">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
+        <obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">trachea</obo:IAO_0000111>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph].</obo:IAO_0000115>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">trachea</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_0003688 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0003688">
@@ -1118,6 +1153,18 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0005921 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0005921">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
+        <obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">middle nasal concha</obo:IAO_0000111>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha.</obo:IAO_0000115>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">middle nasal concha</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_0006314 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006314">
@@ -1285,6 +1332,18 @@
         <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">suprapubic skin</rdfs:label>
     </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/UBERON_3000016 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_3000016">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
+        <obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior nasal wall</obo:IAO_0000111>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule.</obo:IAO_0000115>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior nasal wall</rdfs:label>
+    </owl:Class>
     <rdf:Description>
         <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
     </rdf:Description>

diff --git a/src/ontology/modules/assays.owl b/src/ontology/modules/assays.owl
@@ -2855,7 +2855,7 @@
                 </owl:someValuesFrom>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Measuring if a Hepatitis C virus (HCV) infected patient has an antibody response to HCV core protein by ELISA.</obo:IAO_0000112>
+        <obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Measuring if a Hepacivirus C (HCV) infected patient has an antibody response to HCV core protein by ELISA.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An assay that determines information about an immune response</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Bjoern Peters</obo:IAO_0000117>
@@ -13491,7 +13491,7 @@
                 </owl:intersectionOf>
             </owl:Class>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An antigen specific antibodies assay that is meant to detect antibodies that bind to Hepatitis C virus (HCV) antigens.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An antigen specific antibodies assay that is meant to detect antibodies that bind to Hepacivirus C (HCV) antigens.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Bjoern Peters</obo:IAO_0000117>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris Stoeckert</obo:IAO_0000117>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">James Overton</obo:IAO_0000117>