Update definitions

obi-ontology · Sep 28, 2020 · 948a6e6 · 948a6e6
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diff --git a/src/ontology/modules/biobank-specimens.owl b/src/ontology/modules/biobank-specimens.owl
@@ -2295,10 +2295,10 @@
                 </owl:intersectionOf>
             </owl:Class>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a specimen that is collected from the tracheal anatomic part (the tube connecting larynx to primary bronchi) of the respiratory system of an organism using a suction motion</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is collected with a suctioning tube from the trachea.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
         <obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tracheal wash specimen</obo:IAO_0000118>
-        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">combined from wiki, pubmed, and dictionary</obo:IAO_0000119>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:25338241</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tracheal aspirate specimen</rdfs:label>
     </owl:Class>
 
@@ -2332,9 +2332,9 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a nasal swab specimen that is collected from the mid-turbinate area of  by a mid-turbinate nasal swab, which  guides the collector to the proper depth in order to ensure that the proper depth is reached when collecting sample from mid-turbinate area of the nose.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is collected with a mid-turbinate nasal swab from the turbinate area of the nasal cavity.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
-        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://vimeo.com/135884130</obo:IAO_0000119>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://seattlechildrenslab.testcatalog.org/catalogs/185/files/11633</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mid-turbinate nasal swab specimen</rdfs:label>
     </owl:Class>
 
@@ -2368,9 +2368,10 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a specimen that is collected from the nasal cavity using a suction motion</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is collected with a suctioning tube from the nasal cavity.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
-        <obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nasal wash specimen</obo:IAO_0000118>
+        <obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nasal wash specimen|nasopharyngeal aspirate</obo:IAO_0000118>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nasal aspirate specimen</rdfs:label>
     </owl:Class>
 
@@ -2404,9 +2405,10 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a specimen that is collected from the lower respiratory tract using a suction motion</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is collected with a suctioning tube from the lower respiratory tract.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
         <obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower respiratory tract wash specimen</obo:IAO_0000118>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower respiratory tract aspirate specimen</rdfs:label>
     </owl:Class>
 
@@ -2440,8 +2442,9 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a specimen that is collected from the upper respiratory tract</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is derived from the upper respiratory tract</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper respiratory specimen</rdfs:label>
     </owl:Class>
 
@@ -2475,8 +2478,9 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a specimen that is collected from the lower respiratory tract</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is derived from the lower respiratory tract.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower respiratory tract specimen</rdfs:label>
     </owl:Class>
 
@@ -2510,8 +2514,9 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a specimen that is collected from the anterior nasal wall</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A specimen that is derived from the anterior nasal wall</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
+        <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000119>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior nasal swab specimen</rdfs:label>
     </owl:Class>