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1. Connectomic_Composition_Predictor Connectomic_Composition_Predictor Public

   Predictive Workflow for the mouse brain anatomical connectivity using gene expression (spatial transcriptomics) data

   Jupyter Notebook 1 3

2. Population_Integrator Population_Integrator Public

   A modular pipeline for segmentation, registration, and analysis of large-scale high-resolution neuro-anatomical imaging data. Designed for scalable integration of neuroanatomical connectivity data …

   Python 1 1

3. Neuron_Aligner Neuron_Aligner Public

   Given a list of publicly available morphologies whose soma location resides in an anatomical area of interest, Neuron_Comparer finds a target neuron that is the most morphologically similar to a so…

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4. Mesoscale_Extractor Mesoscale_Extractor Public

   Given a source and a target mouse brain area for which the user wishes to delineate projection patterns, mesoscale_extractor downloads publicly available neuronal morphologies, whose soma is locate…

   Python 1

5. Morphology_Embedder Morphology_Embedder Public

   Morpological Embedder takes as input cell morphologies in the form of 3D point clouds and creates a 2-dimensional embedding in which cells with a similar morphology (shape) are close to each other.

   Python 1