| Instructor | Subject | Topic (Click to access materials, video) | Originally Taught |
|---|---|---|---|
| E. Karlins | High Throughput Sequencing and Analysis | Public projects based on human NGS data (Human genome, HapMap, population genetics, variations…) (Materials, Video) | 24-Feb-2021 |
| B. Jeffrey | High Throughput Sequencing and Analysis | Processing of aligned reads for RNA-seq (Materials, Video) | 03-Mar-2021 |
| Y. Zhu | High Throughput Sequencing and Analysis | RNA-seq Part II, single-cell RNA-seq & pathway analysis (Materials, Video) | 05-Mar-2021 |
| A. Angelova | High Throughput Sequencing and Analysis | Metagenomics overview (Metataxonomics) (Materials, Video) | 10-Mar-2021 |
| P. Subramanian | High Throughput Sequencing and Analysis | Cyber environments for the processing and analysis of NGS data (Materials, Video) | 17-Mar-2021 |
| P. Subramanian | High Throughput Sequencing and Analysis | Managing data and simple analyses in the Galaxy cyber-environment (Practical) (Materials, Video) | 22-Mar-2021 |
| A. Angelova | High Throughput Sequencing and Analysis | Metagenomics overview (Shotgun metagenomics) (Materials, Video) | 08-Apr-2021 |
| A. Angelova | High Throughput Sequencing and Analysis | Functional metagenomics - WGS (Materials, Video) | 12-Apr-2021 |
| H. Lorenzi | Molecular Biology for Bioinformatics | Nucleic Acid Techniques and Tools 1: Intro to NGS and Sanger sequencing (Materials, Video) | 26-Feb-2021 |
| H. Lorenzi | Molecular Biology for Bioinformatics | Nucleic Acid Techniques and Tools 1: Intro to NGS and Sanger sequencing (Materials, Video) | 02-Mar-2021 |
| K. Wollenberg | Molecular Biology for Bioinformatics | Genetic evolution/diversity mechanisms - Part I (Materials, Video) | 14-Apr-2021 |
| K. Wollenberg | Molecular Biology for Bioinformatics | Genetic evolution/diversity mechanisms - Part II (Materials, Video) | 19-Apr-2021 |
| M. Quinones | Molecular Biology for Bioinformatics | Nucleic Acid Techniques and Tools 2: Practical on Sanger or QC of NGS (Materials, Video) | 22-Apr-2021 |
| A. Oler | Online bioinformatics and sequence database | Genome browsers (Materials, Video) | 23-Feb-2021 |
| M. Quinones | Online bioinformatics and sequence database | Primary sequence databases - Part I (Materials, Video) | 04-Mar-2021 |
| M. Quinones | Online bioinformatics and sequence database | Primary sequence databases - Part II (Materials, Video) | 08-Mar-2021 |
| A. Roy | Online bioinformatics and sequence database | Protein databases (Materials, Video) | 06-Apr-2021 |
| A. Roy | Online bioinformatics and sequence database | Protein databases (Materials, Video) | 07-Apr-2021 |
| M. Quinones | Online bioinformatics and sequence database | Advanced literature search (PubMed) (Materials, Video) | 15-Apr-2021 |
| M. Quinones | Online bioinformatics and sequence database | Sequence retrieval tools (SRA) (Materials, Video) | 21-Apr-2021 |
| P. Cruz | Online bioinformatics and sequence database | Cheminformatics (Chemical compound – drug discovery) Lecture (Materials, Video) | 27-Apr-2021 |
| P. Cruz | Online bioinformatics and sequence database | Cheminformatics (Chemical compound – drug discovery) Demo (Materials, Video) | 28-Apr-2021 |
| J. Gu | R programming and Bioconductor | Generating data and manipulating objects - Part I (Materials, Video) | 09-Mar-2021 |
| P. Subramanian | R programming and Bioconductor | Generating graphics in R - Part I (Materials, Video) | 12-Mar-2021 |
| J. Gu | R programming and Bioconductor | Generating data and manipulating objects - Part II (Materials, Video) | 16-Mar-2021 |
| D. Veltri | R programming and Bioconductor | Introduction to R markdown - Part I (Materials, Video) | 24-Mar-2021 |
| P. Subramanian | R programming and Bioconductor | Generating graphics in R - Part II (Materials, Video) | 26-Mar-2021 |
| J. Gu | R programming and Bioconductor | Introduction to Statistical Analysis in R - Part I (Materials, Video) | 31-Mar-2021 |
| J. Gu | R programming and Bioconductor | Introduction to Statistical Analysis in R - Part II (Materials, Video) | 05-Apr-2021 |
| D. Veltri | R programming and Bioconductor | Introduction to R markdown - Part II (Materials, Video) | 13-Apr-2021 |
| T. Armstrong | Unix & Shell Scripting | Introduction to UNIX and Text Editing (Materials, Video) | 25-Feb-2021 |
| T. Armstrong | Unix & Shell Scripting | Introduction to UNIX editors: Vi (Materials, Video) | 01-Mar-2021 |
| T. Armstrong | Unix & Shell Scripting | Introduction to UNIX editors: Vi Advanced Topics (Materials, Video) | 11-Mar-2021 |
| A. Roy | Unix & Shell Scripting | Manipulating files and data on Linux (Materials, Video) | 15-Mar-2021 |
| A. Roy | Unix & Shell Scripting | Shell Scripting/Programming - Part I (Materials, Video) | 19-Mar-2021 |
| A. Roy | Unix & Shell Scripting | Shell Scripting/Programming - Part II (Materials, Video) | 23-Mar-2021 |
| A. Roy | Unix & Shell Scripting | Introduction to Awk and Sed programming - Part I (Materials, Video) | 29-Mar-2021 |
| A. Roy | Unix & Shell Scripting | Introduction to Awk and Sed programming - Part II (Materials, Video) | 30-Mar-2021 |
Computational Biology Specialists from the National Institute of Allergy and Infectious Diseases (NIAID) will be teaching courses on bioinformatics topics and biocomputing tools.
-
Angelina Angelova, Ph.D.*
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Tony Armstrong, Ph.D.*
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Phil Cruz, Ph.D.*
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Jingwen Gu, M.S.*
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Brendan Jeffrey, Ph.D.*
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Eric Karlins, Ph.D.*
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Andrew Oler, Ph.D.
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Mariam Quiñones, Ph.D.
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Amit Roy, Ph.D.*
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Poorani Subramanian, Ph.D.*
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Dan Veltri, Ph.D.
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Kurt Wollenberg, Ph.D.*
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Yunhua Zhu, Ph.D.*
* Instructors provide bioinformatics support at the NIAID as employees of Medical Science and Computing, Inc.