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nf-core/nanoseq v3.1.0 - NObelium Guppy

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@yuukiiwa yuukiiwa released this 10 Mar 11:40
3.1.0
6e563e5
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Learn about vigilant mode.

Major enhancements

  • Removed the guppy basecaller as distributing it via a docker image is a breach to EULA
  • Bump minimum Nextflow version from 21.10.3 -> 21.10.3
  • Update pipeline template to nf-core/tools 2.7.2
  • Update bambu version from 1.0.2 to 2.0.0

Parameters

  • Removed --flowcell as nanoseq no longer supports basecalling
  • Removed --kit as nanoseq no longer supports basecalling
  • Removed --guppy_config as nanoseq no longer supports basecalling
  • Removed --guppy_model as nanoseq no longer supports basecalling
  • Removed --guppy_gpu as nanoseq no longer supports basecalling
  • Removed --guppy_gpu_runners as nanoseq no longer supports basecalling
  • Removed --guppy_cpu_threads as nanoseq no longer supports basecalling
  • Removed --output_demultiplex_fast5 as nanoseq no longer supports basecalling
  • Removed --skip_basecalling as nanoseq no longer supports basecalling
  • Removed --skip_pycoqc as nanoseq no longer supports basecalling

Software dependencies

Dependency Old version New version
bioconductor-bambu 2.0.0 3.0.8
Assets 2