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Fix CI rate-limit #373

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Fix CI rate-limit #373

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edmundmiller
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  • post-release dev bump version and snapshots
  • fix for bug methylKit-compatible files are not copied to publishDir  #354 - dev branch
  • Update modules.config
  • Update CHANGELOG.md
  • chore: Update CHANGELOG
  • ci: Add scatter CI
  • ci: Bump nf-test
  • test: Mark bwameth index generation as failing
  • test: Mark all index tests as failing
  • build: nf-core modules install untar
  • feat: Add untar for indexs
  • test: Remove tests depending on other tests
  • test: Copy nf-test config from fetchngs
  • ci: Don't upload test report
  • Template update for nf-core/tools version 2.11
  • Template update for nf-core/tools version 2.11.1
  • Make index file check more precise
  • Fix test indexes
  • test: Update test lib path
  • ci: Bump nf-test version
  • test: Bump snapshots for nf-test 0.8.2
  • test: Move test samplesheet to assets
  • test: Remove _'s in one sample
  • fix(ERROR ~ fromIndex = -1 #360): Return id when sample field has no _'s
  • update bismark nf-test
  • update tests for new assets/samplesheet
  • update snaps for sample name change
  • add test_data.config and update multiqc tests
  • update custom/dumpsoftwareversions module and snaps
  • chore: Bump versions for 2.6.0 release
  • post-release version bump
  • post-release changelog update
  • ci: Pass secrets.GITHUB_TOKEN

@edmundmiller
ci: Pass secrets.GITHUB_TOKEN
4ae5b83 
Default is just github.token
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github-actions bot commented Jan 9, 2024

This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @edmundmiller,

It looks like this pull-request is has been made against the nf-core/methylseq master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the nf-core/methylseq dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

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github-actions bot commented Jan 9, 2024 •
edited

nf-core lint overall result: Passed ✅

Posted for pipeline commit 4ae5b83

+| ✅ 155 tests passed       |+
#| ❔   4 tests were ignored |#

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2024-01-09 14:19:45

@edmundmiller edmundmiller changed the base branch from master to dev January 12, 2024 01:58
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