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typo in samplesheet in README.md? #391

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fbnrst opened this issue Mar 25, 2024 · 0 comments
Open

typo in samplesheet in README.md? #391

fbnrst opened this issue Mar 25, 2024 · 0 comments

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@fbnrst
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fbnrst commented Mar 25, 2024

There is an example samplesheet in the README.md:

methylseq/README.md

Lines 53 to 57 in 54f823e

sample,fastq_1,fastq_2
SRR389222_sub1,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub1.fastq.gz
SRR389222_sub2,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub2.fastq.gz
SRR389222_sub2,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub3.fastq.gz
Ecoli_10K_methylated,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/Ecoli_10K_methylated_R1.fastq.gz,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/Ecoli_10K_methylated_R2.fastq.gz

I wonder whether there is a typo line 56, because states SRR389222_sub2 as sample, but the file name contains SRR389222_sub3.

Also, it is different to this sample sheet (see line 4), where the sample is SRR389222_sub3:

sample,fastq_1,fastq_2,genome
SRR389222_sub1,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub1.fastq.gz,,
SRR389222_sub2,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub2.fastq.gz,,
SRR389222_sub3,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub3.fastq.gz,,
Ecoli,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/Ecoli_10K_methylated_R1.fastq.gz,https://github.com/nf-core/test-datasets/raw/methylseq/testdata/Ecoli_10K_methylated_R2.fastq.gz,

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