Add general report output target for private build

Adds a general Snakemake target for all report-related outputs and adds
the sample counts by lineage to that target. This change will allow
report content to be generated automatically by the GitHub Action run of
the workflow.

.github/workflows/run-nextflu-private-builds.yaml

@@ -29,6 +29,6 @@ jobs:
           --env NEXTSTRAIN_PASSWORD \
           . \
           deploy_all \
-          all_counts_of_recent_tips_by_clade \
+          all_report_outputs \
           -p \
           --configfile profiles/nextflu-private.yaml

profiles/nextflu-private/report.smk

@@ -1,3 +1,8 @@
+rule all_report_outputs:
+    input:
+        tip_counts_by_clade=expand("builds/{build_name}/counts_of_recent_tips_by_clade.md", build_name=list(config["builds"].keys())),
+        total_sample_count_by_lineage="figures/total-sample-count-by-lineage.png",
+
 rule plot_lineage_counts:
     input:
         h1n1pdm_metadata="data/h1n1pdm/metadata.tsv",
@@ -24,10 +29,6 @@ rule plot_lineage_counts:
             --output-vic-count {output.total_sample_count_vic}
         """
 
-rule all_counts_of_recent_tips_by_clade:
-    input:
-        counts=expand("builds/{build_name}/counts_of_recent_tips_by_clade.md", build_name=list(config["builds"].keys()))
-
 rule count_recent_tips_by_clade:
     input:
         recency="builds/{build_name}/recency.json",