Upload data from fauna to S3 #106
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| name: Upload data from fauna to S3 | |
| # Only support manual trigger of this workflow. | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| triggerPublic: | |
| description: "Trigger Nextstrain public builds" | |
| required: true | |
| type: boolean | |
| publicDockerImage: | |
| description: "Specific container image to use for Nextstrain public builds" | |
| required: false | |
| type: string | |
| triggerPrivateNextflu: | |
| description: "Trigger private Nextflu builds" | |
| required: true | |
| type: boolean | |
| privateNextfluDockerImage: | |
| description: "Specific container image to use for private Nextflu builds" | |
| required: false | |
| type: string | |
| triggerNextfluPrivate: | |
| description: "Trigger nextflu-private group builds" | |
| required: true | |
| type: boolean | |
| nextfluPrivateDockerImage: | |
| description: "Specific container image to use for nextflu-private group builds" | |
| required: false | |
| type: string | |
| triggerNextclade: | |
| description: "Trigger run-nextclade workflow" | |
| required: true | |
| type: boolean | |
| nextcladeDockerImage: | |
| description: "Specific container image to use for the Nextclade workflow" | |
| required: false | |
| type: string | |
| jobs: | |
| upload: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: docker | |
| run: | | |
| nextstrain build \ | |
| --env AWS_ACCESS_KEY_ID \ | |
| --env AWS_SECRET_ACCESS_KEY \ | |
| --env RETHINK_AUTH_KEY \ | |
| --env RETHINK_HOST \ | |
| . \ | |
| -j 4 \ | |
| upload_all_titers \ | |
| upload_all_raw_sequences \ | |
| upload_all_sequences \ | |
| upload_all_metadata \ | |
| --configfile profiles/upload.yaml | |
| trigger: | |
| needs: [upload] | |
| strategy: | |
| matrix: | |
| include: | |
| - trigger: ${{ inputs.triggerPublic }} | |
| workflow: run-public-builds.yaml | |
| image: ${{ inputs.publicDockerImage }} | |
| - trigger: ${{ inputs.triggerPrivateNextflu }} | |
| workflow: run-private-nextflu-builds.yaml | |
| image: ${{ inputs.privateNextfluDockerImage }} | |
| - trigger: ${{ inputs.triggerNextfluPrivate }} | |
| workflow: run-nextflu-private-builds.yaml | |
| image: ${{ inputs.nextfluPrivateDockerImage }} | |
| - trigger: ${{ inputs.triggerNextclade }} | |
| workflow: run-nextclade.yaml | |
| image: ${{ inputs.nextcladeDockerImage }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - if: ${{ matrix.trigger }} | |
| name: Trigger ${{ matrix.workflow }} | |
| run: | | |
| gh workflow run \ | |
| ${{ matrix.workflow }} \ | |
| --repo nextstrain/seasonal-flu \ | |
| -f dockerImage=${{ matrix.image }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} |