23.1.0

These release notes are automatically extracted from the full changelog.

Features

• Support treetime 0.11.* #1310 (@corneliusroemer)
• export: Allow minimal export using only a (newick) tree in augur export v2. #1299 (@jameshadfield)
• A number of schema updates and improvements #1299 (@jameshadfield)
  • We now require all nodes to have node_attrs on them with one of div or num_date present
  • Some never-used properties are removed from the schemas, including a pattern for defining nucleotide INDELs which was never used by augur or auspice.
  • Tip label defaults are now settable within the auspice-config JSON
  • Empty colorings definitions are allowed (the tree will be grey in Auspice)

Bug fixes

• ancestral: Export amino acid sequences inferred for the root node of the tree in the node data JSON output for compatibility with augur translate output. #1317 (@huddlej)