If you use KGExplorer, please cite:
Kitty B. Murphy, Robert Gordon-Smith, Jai Chapman, Momoko Otani, Brian M. Schilder, Nathan G. Skene (2023) Identification of cell type-specific gene targets underlying thousands of rare diseases and subtraits. medRxiv, https://doi.org/10.1101/2023.02.13.23285820
if(!require("BiocManager")) install.packages("BiocManager")
BiocManager::install("neurogenomics/KGExplorer")
library(KGExplorer)utils::sessionInfo()## R version 4.3.1 (2023-06-16)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS Sonoma 14.3.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Europe/London
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## loaded via a namespace (and not attached):
## [1] gtable_0.3.4 jsonlite_1.8.8 renv_1.0.3
## [4] dplyr_1.1.4 compiler_4.3.1 BiocManager_1.30.22
## [7] tidyselect_1.2.0 rvcheck_0.2.1 scales_1.3.0
## [10] yaml_2.3.8 fastmap_1.1.1 here_1.0.1
## [13] ggplot2_3.4.4 R6_2.5.1 generics_0.1.3
## [16] knitr_1.45 yulab.utils_0.1.4 tibble_3.2.1
## [19] desc_1.4.3 dlstats_0.1.7 rprojroot_2.0.4
## [22] munsell_0.5.0 pillar_1.9.0 RColorBrewer_1.1-3
## [25] rlang_1.1.3 utf8_1.2.4 cachem_1.0.8
## [28] badger_0.2.3 xfun_0.42 fs_1.6.3
## [31] memoise_2.0.1.9000 cli_3.6.2 magrittr_2.0.3
## [34] rworkflows_1.0.1 digest_0.6.34 grid_4.3.1
## [37] rstudioapi_0.15.0 lifecycle_1.0.4 vctrs_0.6.5
## [40] data.table_1.15.0 evaluate_0.23 glue_1.7.0
## [43] fansi_1.0.6 colorspace_2.1-0 rmarkdown_2.25
## [46] tools_4.3.1 pkgconfig_2.0.3 htmltools_0.5.7