v0.6.0

What's Changed

• added mmseqs2 as an alternative alignment kernel that guarantees higher sensitivity at the expense of longer computational time, see #33, by @mmolari and @nnoll.
• updated Docker file to include mmseqs2 in the container, by @ivan-aksamentov.
• updated the documentation, including discussion of alignment kernel sensitivities and examples of application of PanGraph to plasmids by @liampshaw .
• errors that occur in worker threads are now emitted on the main thread, see #25.
• fixed bug when using mash option see this commit
• fixed a bug in detransitive, see this commit
• added snakemake pipeline in the script folder to perform the analysis published in our paper.
• added -K option to the build command to control kmer length for mmseqs aligner, see this commit.
• added fasttree to docker container and PanX export to docker tests, see #37 .

New Contributors

• @liampshaw made their first contribution