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fix: build issue with multiple conficting julias
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nnoll committed Feb 25, 2022
1 parent 3e4bd5b commit a30e065
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Showing 3 changed files with 6 additions and 6 deletions.
8 changes: 4 additions & 4 deletions Makefile
Expand Up @@ -2,7 +2,7 @@
.SUFFIXES:
.SECONDARY:

version := 1.7.1
version := 1.7.2

ifeq ($(jc),)
jc := ./vendor/julia-$(version)/bin/julia
Expand All @@ -28,9 +28,9 @@ pangraph: pangraph/bin/pangraph
$(datadir):
mkdir -p $@

$(testdatum): | $(datadir)
julia $(jflags) -e 'import Pkg; Pkg.instantiate(); Pkg.build()'
julia $(jflags) -e 'using PanGraph; PanGraph.Simulation.test()'
$(testdatum): | $(jc) $(datadir)
$(jc) $(jflags) -e 'import Pkg; Pkg.instantiate(); Pkg.build()'
$(jc) $(jflags) -e 'using PanGraph; PanGraph.Simulation.test()'

# TODO: look for ARM vs x86
$(jc):
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2 changes: 1 addition & 1 deletion Manifest.toml
@@ -1,6 +1,6 @@
# This file is machine-generated - editing it directly is not advised

julia_version = "1.7.1"
julia_version = "1.7.2"
manifest_format = "2.0"

[[deps.ArgTools]]
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2 changes: 1 addition & 1 deletion docs/src/index.md
Expand Up @@ -87,4 +87,4 @@ Please see the high-level overview for definitions of library terminology.

## Citing PanGraph

Add citation here
PanGraph: scalable bacterial pan-genome graph construction. Nicholas Noll, Marco Molari, Richard Neher bioRxiv 2022.02.24.481757; doi: https://doi.org/10.1101/2022.02.24.481757

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