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  • Karius
  • Goleta, California

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Pinned

  1. seqspace seqspace Public

    Library to normalize scRNAseq expression data and learn its underlying geometric structure

    Julia

  2. neherlab/pangraph neherlab/pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    Julia 74 6

  3. neherlab/covid19_scenarios neherlab/covid19_scenarios Public

    Models of COVID-19 outbreak trajectories and hospital demand

    JavaScript 1.4k 355

  4. tissueAnalysisSuite tissueAnalysisSuite Public

    A complete set of MATLAB code to segment live-image movies of developing epithelial tissues, track cellular flows, and infer intercellular stresses.

    MATLAB 3 1

  5. vertexModelSimulation vertexModelSimulation Public

    Simulates a growing, dividing epithelial tissue under the active tension network model, as well as under finite pressure differentials.

    MATLAB 1

  6. neherlab/covid19_scenarios_data neherlab/covid19_scenarios_data Public archive

    Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

    Python 42 36