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38 Open 3 Closed
38 Open 3 Closed
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Issues list

How to get sorted_hg19_snp150.txt.gz
#41 opened Oct 10, 2023 by zhangpicb
Cannot download GWAS sum stats from Globus
#40 opened Sep 24, 2022 by roisinncc
Split into two packages: seperate the munge functions from the download functions
#39 opened Dec 31, 2020 by NathanSkene
Deal with files that require horizontal concatenation enhancement New feature or request munge Pertaining to the "munge" module
#38 opened May 4, 2020 by mikegloudemans v2
Replace numerical trait IDs with actual trait names enhancement New feature or request munge Pertaining to the "munge" module
#37 opened May 4, 2020 by mikegloudemans
Define a way to ignore quotes for r-formatted tabular files
#36 opened May 4, 2020 by mikegloudemans v2
1
Munge files containing multiple traits, where trait is specified as a string in one of the columns code-base Maintaining reasonable and intuitive code enhancement New feature or request munge Pertaining to the "munge" module
#35 opened May 4, 2020 by mikegloudemans v2
Allow skipping already-munged files code-base Maintaining reasonable and intuitive code munge Pertaining to the "munge" module usability Making tools more intuitive for the user
#34 opened May 4, 2020 by mikegloudemans
Minimize repeated tasks (like matching rsids) when working with multi-trait files code-base Maintaining reasonable and intuitive code munge Pertaining to the "munge" module optimization Making code faster and more efficient
#33 opened May 4, 2020 by mikegloudemans
Allow subdividing individual column entries on more than one split char code-base Maintaining reasonable and intuitive code enhancement New feature or request munge Pertaining to the "munge" module
#32 opened May 4, 2020 by mikegloudemans v2
1
Make a consistent way to deal with complicated column formats code-base Maintaining reasonable and intuitive code enhancement New feature or request munge Pertaining to the "munge" module usability Making tools more intuitive for the user
#31 opened May 4, 2020 by mikegloudemans v2
2
Devise a notation for denoting ancestry of GWAS files in meta-data enhancement New feature or request munge Pertaining to the "munge" module
#30 opened May 4, 2020 by mikegloudemans
Rework the code to prevent it from dropping unrecognized variants code-base Maintaining reasonable and intuitive code enhancement New feature or request munge Pertaining to the "munge" module
#29 opened May 4, 2020 by mikegloudemans
Make it so p-value input column isn’t mandatory to munge a file compatibility Facilitating modular use with external tools enhancement New feature or request munge Pertaining to the "munge" module
#28 opened May 4, 2020 by mikegloudemans
Improve consistency of effect "beta" columns and "OR" columns code-base Maintaining reasonable and intuitive code compatibility Facilitating modular use with external tools munge Pertaining to the "munge" module
#27 opened May 4, 2020 by mikegloudemans
Verify ref / alt orientation correctness for files incorporated in v2 compatibility Facilitating modular use with external tools maintenance Ongoing updates to GWAS corpus munge Pertaining to the "munge" module
#26 opened May 4, 2020 by mikegloudemans
1
Make an index of sample sizes for every GWAS compatibility Facilitating modular use with external tools enhancement New feature or request munge Pertaining to the "munge" module
#25 opened May 4, 2020 by mikegloudemans v2
Add QC script for verifying that munge worked enhancement New feature or request munge Pertaining to the "munge" module
#24 opened May 4, 2020 by mikegloudemans v2
Assemble a Wiki page depicting "the usual suspect" sites for future updates of this repository download Pertaining to the "download" module maintenance Ongoing updates to GWAS corpus usability Making tools more intuitive for the user
#23 opened May 4, 2020 by mikegloudemans v2
2
Integrate UK Biobank traits download Pertaining to the "download" module enhancement New feature or request munge Pertaining to the "munge" module
#22 opened May 4, 2020 by mikegloudemans
Re-structure munge code base to be more function-based code-base Maintaining reasonable and intuitive code munge Pertaining to the "munge" module
#21 opened May 4, 2020 by mikegloudemans
Make code changes to incorporate all remaining traits from munge_menu_upcoming enhancement New feature or request munge Pertaining to the "munge" module
#20 opened May 4, 2020 by mikegloudemans
Update readme for v2 usability Making tools more intuitive for the user
#19 opened May 4, 2020 by mikegloudemans v2
Upload all munged GWAS for v2 to the Box folder for public download download Pertaining to the "download" module munge Pertaining to the "munge" module
#18 opened May 4, 2020 by mikegloudemans v2
Partition traits into manual download and auto-download download Pertaining to the "download" module munge Pertaining to the "munge" module
#17 opened May 4, 2020 by mikegloudemans v2
ProTip! Exclude everything labeled bug with -label:bug.