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Rework the code to prevent it from dropping unrecognized variants #29

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mikegloudemans opened this issue May 4, 2020 · 0 comments
Open

Rework the code to prevent it from dropping unrecognized variants #29

mikegloudemans opened this issue May 4, 2020 · 0 comments
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code-base Maintaining reasonable and intuitive code enhancement New feature or request munge Pertaining to the "munge" module

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@mikegloudemans
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Information is being lost here.

Specifically, as it is right now, a lot of “dense” variant info from the original file is dropped because for now, we only preserve ones present in the 1K genomes file. Many indels and imputed variants are dropped.
@mikegloudemans mikegloudemans added enhancement New feature or request munge Pertaining to the "munge" module code-base Maintaining reasonable and intuitive code labels May 4, 2020
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code-base Maintaining reasonable and intuitive code enhancement New feature or request munge Pertaining to the "munge" module
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