SAP-11534 : relax clnhgvs value assertion: allow .g

src/check_allele_table.py

@@ -42,7 +42,10 @@
         assert len(map(int, record['measureset_id'].split(';'))) > 0, 'Unexpected "measureset_id" column value: ' + record['measureset_id']
         assert len(map(lambda rcv: int(rcv.strip('RCV')), record['clnacc'].split(';'))) > 0, 'Unexpected "clnacc" column value: ' + record['clnacc']
         assert int(record['allele_id']) > 0, 'Unexpected "rcv" column value: ' + record['allele_id']
-        assert len(record['clnhgvs']) == 0 or "c." in record['clnhgvs'], 'Unexpected "hgvs_c" column value: ' + record['clnhgvs']
+        assert len(record['clnhgvs']) == 0 \
+            or "c." in record['clnhgvs'] \
+            or "g." in record['clnhgvs'],\
+            'Unexpected "clnhgvs" (HGVS.c or HGVS.g) column value: ' + record['clnhgvs']
         assert len(record['hgvs_p']) == 0 or "p." in record['hgvs_p'], 'Unexpected "hgvs_p" column value: ' + record['hgvs_p']
         #assert record['molecular_consequence'], 'Unexpected "molecular_consequence" column value: ' + record['molecular_consequence']