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An Open-Source Software Package for Performing High-Throughput Batch Analysis of Flow Cytometry Data

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PyFlowBAT: An Open-Source Software Package for Performing High-Throughput Batch Analysis of Flow Cytometry Data

Requirements

PyFlowBAT requires Python version >=3.10 and the following packages:

numpy == 1.24.2
matplotlib == 3.7.1
FlowCal == 1.3.0
statsmodels == 0.13.5
scipy == 1.10.1
pandas == 2.0.0

To install PyFlowBAT and all required dependencies, run

pip install pyflowbat

from this directory—the one containing only this README.md file and a folder named pyflowbat.

This will install pyflowbat to your Python site-packages like a regular pip package.

Linux installation note

On some versions of Linux, the Python tkinter package may not be installed. Since this is a standard library package, it cannot be installed using pip. To install tkinter, run the following—or equivalent for your Linux distro—command:

sudo apt get install python3-tkinter

Usage

Full PyFlowBAT documentation is available here. Demonstrations of using PyFlowBAT are available in this repository.

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An Open-Source Software Package for Performing High-Throughput Batch Analysis of Flow Cytometry Data

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