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37 Open 211 Closed
37 Open 211 Closed
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Issues list

Accessing and plotting QC metrics after merging to AnnDataSet: more documentation needed documentation 📖 Improvements or additions to documentation
#300 opened Apr 26, 2024 by jeremymsimon
1
Annotation of differentially accessible peaks
#299 opened Apr 23, 2024 by ayavuzcakir
1
Error related to parallelism when running snap.tl.macs3 when running on the cluster documentation 📖 Improvements or additions to documentation
#298 opened Apr 22, 2024 by PauBadiaM
2
snap.tl.macs3
#297 opened Apr 17, 2024 by TingTingShao
hard to understand about the description in filter features.
#290 opened Apr 8, 2024 by beyondpie
1
add_cor_scores
#286 opened Apr 2, 2024 by TingTingShao
2
obs_names resets to original barcodes when assigned via AnnDataset
#278 opened Mar 30, 2024 by newtonharry
trouble with pbmc notebook
#277 opened Mar 28, 2024 by vjcitn
4
scanpy AnnData to snapatac2 AnnData: cannot read csr_matrix bug 🐛 Something isn't working
#276 opened Mar 28, 2024 by beyondpie
2
color by accessibility of a certain region
#270 opened Mar 20, 2024 by TingTingShao
SnapATAC2 Docker Image Pushed to Docker Hub
#263 opened Mar 16, 2024 by dtgz-sudo
add_cor_scores could only selects capitalized genes?
#260 opened Mar 15, 2024 by zkcao
1
Read bam with split reads enhancement ✨ New feature or request
#259 opened Mar 14, 2024 by lauradmartens
5
snap.pp.import_data with list of fragment files and list of files containing whitelist barcodes enhancement ✨ New feature or request
#247 opened Mar 6, 2024 by strohstern
2
"obs_names" error in snapatac2.tl.add_cor_scores
#240 opened Feb 15, 2024 by MubasherMohammed
7
annotation notebook does not run within container
#238 opened Feb 13, 2024 by vjcitn
4
'list' object has no attribute 'intersection'
#235 opened Feb 7, 2024 by lemonsky123
2
thread '<unnamed>' panicked at /root/.cargo/registry/src/index.crates.io-6f17d22bba15001f/pyanndata-0.2.1/src/anndata.rs:36:60:
#231 opened Feb 3, 2024 by Susan920715
2
combine several AnnDataSets into one AnnDataSet
#228 opened Feb 2, 2024 by Susan920715
2
Runtime question - atlas-scale analysis
#223 opened Jan 27, 2024 by nleroy917
5
computing p-value associated with the snapatac2.tl.add_cor_scores output. enhancement ✨ New feature or request
#218 opened Jan 21, 2024 by zkcao
1
Installation failed installation windows bugs related to Windows systems
#216 opened Jan 18, 2024 by gitsawww
5
ex.export_coverage fails with PanicException: No data was written.
#214 opened Jan 16, 2024 by adamklie
5
core file produced when running snap.pp.mnc_correct
#211 opened Jan 10, 2024 by lemonsky123
2
Adding broad peak calling option in MACS3 function? enhancement ✨ New feature or request
#210 opened Jan 8, 2024 by zkcao
1
ProTip! Updated in the last three days: updated:>2024-05-06.