Discussions

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  Usage principles on AnnDataSet

  dbrg77 started May 7, 2024 in General

  

  

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  Spectral embedding with mixed high/low depth nuclei samples

  wangmeijiao asked Apr 14, 2024 in Q&A · Unanswered

  

  

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  What is the input format to peak calling?

  adamklie started Apr 12, 2024 in General

  

  

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  Integration with SCENICplus

  TingTingShao announced Mar 16, 2024 in Announcements · Closed

  

  

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  snap.pp.mnc_correct groupby

  TingTingShao announced Apr 10, 2024 in Announcements

  

  

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  marker genes

  TingTingShao started Apr 2, 2024 in Ideas

  

  

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  Providing pre-defined clusters to feature selection from annotated cluster cell types via paired scRNA-seq data

  newtonharry started Mar 30, 2024 in Ideas

  

  

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  Notes on feature selection

  research 🔬 more research needed

  kaizhang started Mar 14, 2023 in Ideas

  

  

  

  

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  Where does the iterative feature selection approach originate from?

  newtonharry started Mar 30, 2024 in General · Closed

  

  

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  What is the SnapATAC2 definition of a "reproducible" peak?

  adamklie asked Mar 22, 2024 in Q&A · Answered

  

  

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  snap.pp.select_features

  wangjiawen2013 announced Sep 12, 2023 in Announcements

  

  

  

  

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  How to interpret the eigenvalues of spectral embedding plot

  newtonharry started Mar 22, 2024 in General

  

  

  

  

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  How does SnapAtac2 snap.tl.merge_peaks work?

  1010shane asked Jan 3, 2024 in Q&A · Answered

  

  

  

  

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  Failed installation

  wenhaochen3 asked Mar 22, 2024 in Q&A · Unanswered

  

  

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  try different knn methods

  TingTingShao announced Mar 16, 2024 in Announcements

  

  

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  [Question from Beginner] How can I use SnapATAC2 if I don't have BAM file or fragment files?

  JiehoonKwak announced Mar 18, 2024 in Announcements

  

  

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  Question: what are the setting optimised for speed rather than memory use?

  vitkl announced Jul 14, 2023 in Announcements

  

  

  

  

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  Analysis of single-cell dataset that includes both single- and paired-end samples?

  zhang-jiankun announced Mar 11, 2024 in Announcements

  

  

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  Multi-sample modality pipeline QC

  TingTingShao announced Mar 12, 2024 in Announcements

  

  

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  sub-typing function

  archieandrews10 asked Feb 9, 2024 in Q&A · Unanswered

  

  

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  thread '<unnamed>' panicked at /root/.cargo/registry/src/index.crates.io-6f17d22bba15001f/pyanndata-0.2.1/src/anndata.rs:36:60:

  Susan920715 asked Feb 2, 2024 in Q&A · Unanswered

  

  

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  Coverage plots

  pouriamomayyezi asked Nov 21, 2023 in Q&A · Unanswered

  

  

  

  

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  program killed when creating snap files

  qing5579 asked Nov 17, 2023 in Q&A · Unanswered

  

  

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  Question: Future of anndata-rs with continuing anndata development?

  mtvector announced Nov 9, 2023 in Announcements

  

  

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  Can I add filtered_tf_bc_matrix to my AnnDataset object?

  st4302 started Oct 24, 2023 in General

  

  

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