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Chromosome Poster - Ideogram Layout with Space filling curve #53

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josiahseaman opened this issue Mar 26, 2018 · 3 comments
Open

Chromosome Poster - Ideogram Layout with Space filling curve #53

josiahseaman opened this issue Mar 26, 2018 · 3 comments
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@josiahseaman
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josiahseaman commented Mar 26, 2018 •
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@josiahseaman
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First working run after converting Yan Wong's code to use FluentDNA architecture. Next step: condense.

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I figured out x and y scale and how to collapse it.

josiahseaman added a commit that referenced this issue Mar 26, 2018
@josiahseaman
#53 Initial conversion of Yan Wong's python mockup to FluentDNA archi…
0916763 
…tecture.
josiahseaman added a commit that referenced this issue Mar 26, 2018
@josiahseaman
#53 Figured out adjustable x_scale and y_scale math
f62f8a1
josiahseaman added a commit that referenced this issue Mar 26, 2018
@josiahseaman
#53 Using 1,1 scale to make a demo of chr19 sample
8ee4841
josiahseaman added a commit that referenced this issue Mar 26, 2018
@josiahseaman
#53 Made optimized scale 1 loop that is twice as fast.
dce3b94
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
#53 Added scale options and correct image dimension calculations work…
0647269 
…s for large chromosomes.
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
#53 Very hacked together top level padding example
cbb3700
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
#53 Acceptable padding for horizontal lines
a81d606
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
#53 Integrating the stand-alone Ideogram with the rest of the infrast…
e0734f5 
…ructure.
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
Updated Ideogram with Annotation outlines. Text still WIP #53
0bc98f5
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
Cleaned up Ideogram Annotation text with horizontal and vertical cent…
46b0323 
…ering #53
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
Annotation text font size improvements and performance speedups #53 #59
8c118fb
josiahseaman added a commit that referenced this issue Sep 24, 2018
@josiahseaman
Trying out new colors #53
33a9000
josiahseaman added a commit that referenced this issue Sep 25, 2018
@josiahseaman
Light color for whole gene area to emphasize intergenic regions. #53
8373b06
@josiahseaman josiahseaman mentioned this issue Sep 25, 2018
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josiahseaman added a commit that referenced this issue Oct 3, 2018
@josiahseaman
Major refactor of draw_extras_for_chromosome() to hopefully use much …
6d075b6 
…less memory #53
@josiahseaman josiahseaman mentioned this issue Dec 4, 2018
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@josiahseaman
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Pending Enhancements

  • Handling more than one Contig in a single image
  • Poster Layout logic for chromosome order and labels
  • Separate image layers for sequence, highlighting, text
  • Invert selection coloring of exons and genes vs intergenic regions.

@josiahseaman josiahseaman reopened this Dec 4, 2018
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