Useful to developers: Outputting Gene Coordinates to CSV

[josiahseaman]

I'm creating this issue here in the hopes of building developer documentation that will be helpful to others that want to add some small feature to FluentDNA.

Follow Developer Installation Instructions. Use a Python 3.4 virtualenv.

The first step is going to be getting FluentDNA running from source. Pip install is likely the easiest, since you can select you branch. You need to add a numpy dependency for Ideograms:
pip install numpy==1.13.3

pip install --process-dependency-links git+https://github.com/josiahseaman/FluentDNA.git@i53_ideogram

Personally, I use PyCharm for development. It's free and you can check out directly from GitHub. It's very convenient.

#53

Outputting CSV

• Add a flag at the bottom of fluentdna.py
• pass flag to Ideogram constructor in fluentdna.py
• in OutlinedAnnotations.draw_exons() or similar open CSV and write.